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SRX3026830: RNA-Seq of Myzus persicae G002: Gut
1 ILLUMINA (Illumina HiSeq 2500) run: 65.5M spots, 16.4G bases, 5.4Gb downloads

Design: Epicentre ScriptSeqTM Complete Gold Kit (Human/Mouse/Rat)-Low Input Protocol
Submitted by: Wilson Group at University of Miami (Wilson Group at UM)
Study: Aphididae Raw sequence reads
show Abstracthide Abstract
In this study, we investigated the relationship between gene family expansions and a symbiotic partnership aphids have with the bacterium Buchnera aphidicola. Aphids are sap-feeding insects and rely on Buchnera for nutrients, including essential amino acids. Interestingly, aphids also have experienced many gene duplications in their amino acid transporters. Amino acid transporter duplication has been hypothesized to be driven by selection for amino acid transporters to operate in symbiosis, mediating nutrient exchange between aphids and Buchnera. We used a comparative transcriptomic approach to determine when in aphid evolution the amino acid transporters duplicated and if expression in the aphid cells housing Buchnera was conserved across different aphid species. This study addresses how an organism''s natural history and ecological traits can shape its genome architecture.
Sample:
SAMN07375407 • SRS2375915 • All experiments • All runs
Organism: Myzus persicae
Library:
Name: Mp_G002_Gut
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: METATRANSCRIPTOMIC
Selection: DNase
Layout: PAIRED
Runs: 1 run, 65.5M spots, 16.4G bases, 5.4Gb
Run# of Spots# of BasesSizePublished
SRR585806565,490,00816.4G5.4Gb2017-11-21

ID:
4303280

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